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Type: Candidate PAI (PAI-like region overlapping GI(s)) Strain : Salmonella enterica Ty2 (NC_004631) Location : 4391683 - 4526050 bp Size : 134368 bp GC content : 49.7 % GC bias (=GCregion - GCgenome) : -2.33 % |
| No | Name | GenBank Accn | Location | Size(bp) | Strand | Product | Putative Virulence / Resistance* |
| 1 | NA | NP_807825.1 | 4391683-4391976 | 294 | + | hypothetical protein | - |
| 2 | NA | NP_807826.1 | 4391973-4392464 | 492 | + | acetyltransferase | - |
| 3 | phoN | NP_807827.1 | 4392705-4393457 | 753 | - | nonspecific acid phosphatase | - |
| 4 | NA | NP_807828.1 | 4394302-4395336 | 1035 | + | hypothetical protein | - |
| 5 | NA | NP_807829.1 | 4395333-4396697 | 1365 | + | DNA helicase | - |
| 6 | NA | NP_807830.1 | 4396690-4398489 | 1800 | + | hypothetical protein | - |
| 7 | NA | NP_807831.1 | 4398658-4398963 | 306 | + | hypothetical protein | - |
| 8 | NA | NP_807832.1 | 4399091-4399672 | 582 | + | hypothetical protein | - |
| 9 | NA | NP_807833.1 | 4399757-4400314 | 558 | + | hypothetical protein | - |
| 10 | NA | NP_807834.1 | 4400559-4401902 | 1344 | + | hypothetical protein | - |
| 11 | NA | NP_807835.1 | 4402488-4403267 | 780 | + | hypothetical protein | - |
| 12 | topB | NP_807836.1 | 4403378-4405372 | 1995 | + | DNA topoisomerase III | - |
| 13 | NA | NP_807837.1 | 4406040-4406489 | 450 | + | hypothetical protein | - |
| 14 | NA | NP_807838.1 | 4406570-4406788 | 219 | + | hypothetical protein | - |
| 15 | ssb | NP_807839.1 | 4406801-4407337 | 537 | + | single-stranded DNA-binding protein | Virulence |
| 16 | NA | - | 4407403-4408353 | 951 | + | - | - |
| 17 | pilL | NP_807840.1 | 4408518-4409762 | 1245 | + | hypothetical protein | Virulence |
| 18 | pilM | NP_807841.1 | 4409765-4410184 | 420 | + | hypothetical protein | Virulence |
| 19 | pilN' | - | 4410130-4410555 | 426 | - | - | Virulence |
| 20 | pilN' | - | 4410631-4411894 | 1264 | + | - | Virulence |
| 21 | pilO | NP_807842.1 | 4411887-4413182 | 1296 | + | pilus assembly protein | Virulence |
| 22 | pilP | NP_807843.1 | 4413280-4413750 | 471 | + | pilus assembly protein | Virulence |
| 23 | pilQ | NP_807844.1 | 4413760-4415475 | 1716 | + | nucleotide-binding protein | Virulence |
| 24 | pilR | NP_807845.1 | 4415472-4416557 | 1086 | + | hypothetical protein | Virulence |
| 25 | pilS | NP_807846.1 | 4416557-4417192 | 636 | + | prepilin | Virulence |
| 26 | pilT | NP_807847.1 | 4417202-4417678 | 477 | + | hypothetical protein | Virulence |
| 27 | pilU | NP_807848.1 | 4417675-4418337 | 663 | + | prepilin peptidase | Virulence |
| 28 | pilV | NP_807849.1 | 4418334-4419641 | 1308 | + | prepilin | Virulence |
| 29 | rci | NP_807850.1 | 4419989-4421140 | 1152 | + | shufflon-specific DNA recombinase | - |
| 30 | pilK | NP_807851.1 | 4421237-4421704 | 468 | + | hypothetical protein | Virulence |
| 31 | NA | NP_807852.1 | 4421916-4422791 | 876 | + | hypothetical protein | - |
| 32 | NA | NP_807853.1 | 4423298-4424212 | 915 | + | hypothetical protein | - |
| 33 | NA | NP_807854.1 | 4424231-4424971 | 741 | + | hypothetical protein | - |
| 34 | NA | NP_807855.1 | 4425085-4425636 | 552 | + | hypothetical protein | - |
| 35 | NA | NP_807856.1 | 4425672-4426172 | 501 | + | hypothetical protein | - |
| 36 | NA | NP_807857.1 | 4426182-4426751 | 570 | + | hypothetical protein | - |
| 37 | NA | NP_807858.1 | 4426771-4428861 | 2091 | + | hypothetical protein | - |
| 38 | NA | NP_807859.1 | 4428858-4429616 | 759 | + | hypothetical protein | - |
| 39 | NA | NP_807860.1 | 4429835-4430107 | 273 | + | hypothetical protein | - |
| 40 | NA | NP_807861.1 | 4430107-4430346 | 240 | + | hypothetical protein | - |
| 41 | NA | NP_807862.1 | 4430376-4430738 | 363 | + | hypothetical protein | - |
| 42 | NA | NP_807863.1 | 4431119-4431772 | 654 | + | hypothetical protein | - |
| 43 | NA | NP_807864.1 | 4431772-4432671 | 900 | + | hypothetical protein | - |
| 44 | NA | NP_807865.1 | 4432661-4434139 | 1479 | + | hypothetical protein | - |
| 45 | NA | NP_807866.1 | 4434132-4434575 | 444 | + | lipoprotein | - |
| 46 | NA | - | 4434572-4437411 | 2840 | + | - | - |
| 47 | NA | NP_807869.1 | 4437566-4437952 | 387 | + | hypothetical protein | - |
| 48 | NA | NP_807870.1 | 4438107-4438499 | 393 | + | hypothetical protein | - |
| 49 | NA | NP_807871.1 | 4438496-4439464 | 969 | + | hypothetical protein | - |
| 50 | NA | NP_807872.1 | 4439479-4440909 | 1431 | + | hypothetical protein | - |
| 51 | NA | NP_807873.1 | 4440906-4441238 | 333 | + | hypothetical protein | - |
| 52 | NA | NP_807874.1 | 4441242-4442747 | 1506 | + | hypothetical protein | - |
| 53 | NA | NP_807875.1 | 4442986-4444233 | 1248 | + | hypothetical protein | Virulence |
| 54 | NA | NP_807876.2 | 4444218-4444859 | 642 | + | hypothetical protein | Virulence |
| 55 | NA | NP_807877.1 | 4445070-4445612 | 543 | - | hypothetical protein | - |
| 56 | NA | NP_807878.1 | 4446878-4447798 | 921 | + | hypothetical protein | - |
| 57 | NA | NP_807879.1 | 4448315-4448824 | 510 | + | hypothetical protein | - |
| 58 | NA | NP_807880.1 | 4448920-4449300 | 381 | + | hypothetical protein | - |
| 59 | NA | NP_807881.1 | 4449766-4450350 | 585 | + | hypothetical protein | - |
| 60 | NA | NP_807882.1 | 4450347-4450643 | 297 | + | hypothetical protein | - |
| 61 | NA | NP_807883.1 | 4450721-4451179 | 459 | + | hypothetical protein | - |
| 62 | NA | NP_807884.1 | 4451268-4453217 | 1950 | + | hypothetical protein | - |
| 63 | NA | NP_807885.1 | 4453289-4454197 | 909 | + | hypothetical protein | - |
| 64 | NA | NP_807886.1 | 4454271-4455170 | 900 | + | hypothetical protein | - |
| 65 | NA | NP_807887.1 | 4455212-4455571 | 360 | + | hypothetical protein | - |
| 66 | NA | NP_807888.1 | 4455671-4455940 | 270 | - | hypothetical protein | - |
| 67 | umuC | NP_807889.1 | 4456072-4457346 | 1275 | - | DNA polymerase V subunit UmuC | - |
| 68 | NA | NP_807890.1 | 4457565-4457942 | 378 | + | hypothetical protein | - |
| 69 | NA | NP_807891.1 | 4458029-4458247 | 219 | - | positive regulator of late gene transcription | - |
| 70 | NA | NP_807892.1 | 4458315-4459415 | 1101 | - | regulator of late gene expression | - |
| 71 | NA | NP_807893.1 | 4459412-4459897 | 486 | - | phage tail protein | - |
| 72 | NA | NP_807894.1 | 4459897-4462677 | 2781 | - | hypothetical protein | - |
| 73 | NA | NP_807895.1 | 4462670-4462789 | 120 | - | hypothetical protein | - |
| 74 | NA | NP_807896.1 | 4462804-4463106 | 303 | - | phage tail protein | - |
| 75 | NA | NP_807897.1 | 4463161-4463676 | 516 | - | major tail tube protein | - |
| 76 | NA | NP_807898.1 | 4463686-4464858 | 1173 | - | major tail sheath protein | - |
| 77 | pin | - | 4464961-4465182 | 222 | - | - | - |
| 78 | sopE | NP_807899.1 | 4465393-4466115 | 723 | + | invasion-associated secreted protein | Virulence |
| 79 | NA | NP_807900.1 | 4466313-4466720 | 408 | - | phage tail fiber protein | - |
| 80 | NA | NP_807901.1 | 4466727-4468346 | 1620 | - | phage tail fiber protein | - |
| 81 | NA | NP_807902.1 | 4468343-4468948 | 606 | - | phage tail protein | - |
| 82 | NA | NP_807903.1 | 4468941-4469849 | 909 | - | phage baseplate assembly protein | - |
| 83 | NA | NP_807904.1 | 4469836-4470195 | 360 | - | phage baseplate assembly protein | - |
| 84 | NA | NP_807905.1 | 4470192-4470770 | 579 | - | phage baseplate assembly protein | - |
| 85 | NA | NP_807906.1 | 4470839-4471285 | 447 | - | phage tail completion protein | - |
| 86 | NA | - | 4471278-4471661 | 384 | + | - | - |
| 87 | NA | NP_807907.1 | 4471805-4472230 | 426 | - | regulatory protein | - |
| 88 | NA | NP_807908.1 | 4472230-4472607 | 378 | - | hypothetical protein | - |
| 89 | nucD | NP_807909.1 | 4472612-4473082 | 471 | - | lysozyme | - |
| 90 | nucE | NP_807910.1 | 4473102-4473317 | 216 | - | secretion protein | - |
| 91 | NA | NP_807911.1 | 4473321-4473524 | 204 | - | phage tail protein | - |
| 92 | NA | NP_807912.1 | 4473524-4473988 | 465 | - | capsid completion protein | - |
| 93 | NA | NP_807913.1 | 4474082-4474732 | 651 | - | phage terminase | - |
| 94 | NA | NP_807914.1 | 4474736-4475800 | 1065 | - | major capsid protein | - |
| 95 | NA | NP_807915.1 | 4475817-4476650 | 834 | - | capsid protein | - |
| 96 | NA | NP_807916.1 | 4476793-4478559 | 1767 | + | terminase subunit | - |
| 97 | NA | NP_807917.1 | 4478556-4479602 | 1047 | + | capsid portal protein | - |
| 98 | NA | NP_807918.1 | 4479651-4480346 | 696 | - | hypothetical protein | - |
| 99 | NA | NP_807919.1 | 4480366-4481430 | 1065 | - | hypothetical protein | - |
| 100 | NA | NP_807920.1 | 4481427-4482491 | 1065 | - | hypothetical protein | - |
| 101 | NA | NP_807921.1 | 4482501-4482719 | 219 | - | hypothetical protein | - |
| 102 | NA | - | 4482818-4483248 | 431 | - | - | - |
| 103 | NA | NP_807922.1 | 4483416-4485824 | 2409 | - | hypothetical protein | - |
| 104 | NA | NP_807923.1 | 4485815-4486675 | 861 | - | DNA adenine methylase | - |
| 105 | NA | NP_807924.1 | 4486672-4487256 | 585 | - | exonuclease | - |
| 106 | NA | NP_807925.1 | 4487253-4487480 | 228 | - | hypothetical protein | - |
| 107 | NA | NP_807926.1 | 4487480-4487713 | 234 | - | hypothetical protein | - |
| 108 | NA | NP_807927.1 | 4487781-4488122 | 342 | - | hypothetical protein | - |
| 109 | NA | NP_807928.1 | 4488086-4488286 | 201 | - | hypothetical protein | - |
| 110 | cII | NP_807929.1 | 4488294-4488803 | 510 | - | phage regulatory protein | - |
| 111 | apl | NP_807930.1 | 4488836-4489078 | 243 | - | phage regulatory protein | - |
| 112 | cI | NP_807931.1 | 4489195-4489827 | 633 | + | phage repressor protein cI | - |
| 113 | NA | NP_807932.1 | 4489831-4490856 | 1026 | + | phage integrase | - |
| 114 | NA | YP_006892470.1 | 4490963-4491316 | 354 | - | hypothetical protein | - |
| 115 | NA | NP_807933.1 | 4491584-4491697 | 114 | + | hypothetical protein | - |
| 116 | NA | NP_807934.1 | 4491933-4492220 | 288 | + | hypothetical protein | - |
| 117 | NA | NP_807935.1 | 4492231-4493121 | 891 | + | methyltransferase | - |
| 118 | yjhP | NP_807936.1 | 4493121-4493867 | 747 | + | hypothetical protein | - |
| 119 | vexE | NP_807937.1 | 4494169-4496139 | 1971 | - | VI polysaccharide export protein | Virulence |
| 120 | vexD | NP_807938.1 | 4496159-4497463 | 1305 | - | VI polysaccharide export inner-membrane protein | Virulence |
| 121 | vexC | NP_807939.1 | 4497486-4498181 | 696 | - | VI polysaccharide export ATP-binding protein | Virulence |
| 122 | vexB | NP_807940.1 | 4498207-4499001 | 795 | - | VI polysaccharide export inner-membrane protein | Virulence |
| 123 | vexA | NP_807941.1 | 4499011-4500078 | 1068 | - | VI polysaccharide export protein | Virulence |
| 124 | tviE | NP_807942.1 | 4500123-4501859 | 1737 | - | VI polysaccharide biosynthesis protein TviE | Virulence |
| 125 | tviD | NP_807943.1 | 4501859-4504354 | 2496 | - | VI polysaccharide biosynthesis protein | Virulence |
| 126 | tviC | NP_807944.1 | 4504378-4505424 | 1047 | - | VI polysaccharide biosynthesis epimerase | Virulence |
| 127 | tviB | NP_807945.1 | 4505427-4506704 | 1278 | - | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence |
| 128 | tviA | NP_807946.1 | 4506949-4507488 | 540 | - | VI polysaccharide biosynthesis protein | Virulence |
| 129 | NA | NP_807947.1 | 4508029-4508217 | 189 | + | hypothetical protein | - |
| 130 | NA | NP_807948.1 | 4508342-4509853 | 1512 | + | DNA helicase | - |
| 131 | NA | NP_807949.1 | 4509837-4511426 | 1590 | + | hypothetical protein | - |
| 132 | NA | NP_807950.1 | 4511590-4512603 | 1014 | + | phage integrase | - |
| 133 | NA | NP_807951.1 | 4513030-4513323 | 294 | + | hypothetical protein | - |
| 134 | NA | NP_807952.1 | 4513320-4513808 | 489 | + | hypothetical protein | - |
| 135 | NA | NP_807953.1 | 4513988-4514440 | 453 | - | hypothetical protein | - |
| 136 | NA | NP_807954.1 | 4515077-4517362 | 2286 | - | hypothetical protein | - |
| 137 | NA | NP_807955.1 | 4517443-4519116 | 1674 | - | hypothetical protein | - |
| 138 | NA | NP_807956.1 | 4519663-4520124 | 462 | + | hypothetical protein | - |
| 139 | cII | NP_807957.1 | 4520121-4520342 | 222 | + | transcriptional regulator | - |
| 140 | NA | NP_807958.1 | 4520376-4520519 | 144 | - | hypothetical protein | - |
| 141 | NA | NP_807959.1 | 4520735-4521061 | 327 | - | hypothetical protein | - |
| 142 | NA | NP_807960.1 | 4521199-4521981 | 783 | + | hypothetical protein | - |
| 143 | NA | NP_807961.1 | 4522006-4522218 | 213 | - | hypothetical protein | - |
| 144 | int | - | 4522608-4522886 | 279 | + | - | - |
| 145 | NA | NP_807962.1 | 4522962-4524245 | 1284 | - | hypothetical protein | - |
| 146 | int | NP_807963.1 | 4524556-4525815 | 1260 | - | bacteriophage integrase | - |
| 147 | tRNA-Phe | - | 4525975-4526050 | 76 | - | tRNA-Phe | - |