|
Type: Candidate PAI (PAI-like region overlapping GI(s)) Strain : Salmonella enterica CT18 (NC_003198) Location : 4407033 - 4543148 bp Size : 136116 bp GC content : 49.7 % GC bias (=GCregion - GCgenome) : -2.43 % |
| No | Name | GenBank Accn | Location | Size(bp) | Strand | Product | Putative Virulence / Resistance* |
| 1 | STY4517 | NP_458613.1 | 4407033-4407326 | 294 | + | conserved hypothetical protein | - |
| 2 | STY4518 | NP_458614.1 | 4407323-4407814 | 492 | + | Putative acetyltransferase | - |
| 3 | phoN | NP_458615.1 | 4408055-4408807 | 753 | - | nonspecific acid phosphatase precursor | - |
| 4 | tRNA-Phe | - | 4409511-4409574 | 64 | - | tRNA-Phe | - |
| 5 | STY4521 | NP_458616.1 | 4409652-4410686 | 1035 | + | hypothetical protein | - |
| 6 | STY4522 | NP_458617.1 | 4410683-4412047 | 1365 | + | DNA helicase | - |
| 7 | STY4523 | NP_458618.1 | 4412040-4413839 | 1800 | + | hypothetical protein | - |
| 8 | STY4524 | NP_458619.1 | 4414008-4414313 | 306 | + | hypothetical protein | - |
| 9 | STY4525 | NP_458620.3 | 4414441-4415022 | 582 | + | hypothetical protein | - |
| 10 | STY4526 | NP_458621.1 | 4415107-4415664 | 558 | + | hypothetical protein | - |
| 11 | STY4528 | NP_458622.1 | 4415909-4417252 | 1344 | + | hypothetical protein | - |
| 12 | STY4529 | NP_458623.1 | 4417838-4418617 | 780 | + | hypothetical protein | - |
| 13 | topB | NP_458624.1 | 4418728-4420722 | 1995 | + | topoisomerase B | - |
| 14 | STY4534 | NP_458625.1 | 4421390-4421839 | 450 | + | hypothetical protein | - |
| 15 | STY4535 | NP_458626.1 | 4421920-4422138 | 219 | + | hypothetical protein | - |
| 16 | ssB | NP_458627.1 | 4422151-4422687 | 537 | + | single strand binding protein | Virulence |
| 17 | STY4537 | - | 4422753-4423703 | 951 | + | conserved hypothetical protein (pseudogene) | - |
| 18 | pilL | NP_458628.1 | 4423868-4425112 | 1245 | + | putative exported protein | Virulence |
| 19 | pilM | NP_458629.1 | 4425115-4425534 | 420 | + | putative exported protein | Virulence |
| 20 | pilN' | NP_458630.1 | 4425480-4425905 | 426 | - | PilN lipoprotein homolog (pseudogene) | Virulence |
| 21 | NA | - | 4425480-4425489 | 10 | - | - | - |
| 22 | NA | - | 4425980-4425989 | 10 | + | - | - |
| 23 | pilN' | - | 4425981-4427244 | 1264 | + | pilus assembly protein (pseudogene) | Virulence |
| 24 | pilO | NP_458631.1 | 4427237-4428532 | 1296 | + | putative pilus assembly protein | Virulence |
| 25 | pilP | NP_458632.1 | 4428630-4429100 | 471 | + | pilus assembly protein | Virulence |
| 26 | pilQ | NP_458633.1 | 4429110-4430825 | 1716 | + | nucleotide-binding protein | Virulence |
| 27 | pilR | NP_458634.1 | 4430822-4431907 | 1086 | + | putative membrane protein | Virulence |
| 28 | pilS | NP_458635.1 | 4431907-4432542 | 636 | + | prepilin | Virulence |
| 29 | pilT | NP_458636.1 | 4432552-4433028 | 477 | + | putative membrane protein | Virulence |
| 30 | pilU | NP_458637.1 | 4433025-4433687 | 663 | + | prepilin peptidase | Virulence |
| 31 | pilV | NP_458638.1 | 4433684-4434991 | 1308 | + | prepilin | Virulence |
| 32 | NA | - | 4434727-4434745 | 19 | + | - | - |
| 33 | 'pilV2 | NP_458639.1 | 4434993-4435253 | 261 | - | prepilin, alternative C-terminal region | Virulence |
| 34 | NA | - | 4435236-4435254 | 19 | - | - | - |
| 35 | rci | NP_458640.1 | 4435339-4436490 | 1152 | + | shufflon-specific DNA recombinase | - |
| 36 | pilK | NP_458641.1 | 4436587-4437054 | 468 | + | putative exported protein | Virulence |
| 37 | STY4554 | NP_458642.1 | 4437266-4438141 | 876 | + | hypothetical protein | - |
| 38 | STY4557 | NP_458643.1 | 4438648-4439562 | 915 | + | putative membrane protein | - |
| 39 | STY4558 | NP_458644.1 | 4439581-4440321 | 741 | + | putative exported protein | - |
| 40 | STY4559 | NP_458645.1 | 4440435-4440986 | 552 | + | hypothetical protein | - |
| 41 | STY4560 | NP_458646.1 | 4441022-4441522 | 501 | + | hypothetical protein | - |
| 42 | STY4561 | NP_458647.1 | 4441532-4442101 | 570 | + | putative membrane protein | - |
| 43 | STY4562 | NP_458648.1 | 4442121-4444211 | 2091 | + | hypothetical protein | - |
| 44 | STY4563 | NP_458649.1 | 4444208-4444966 | 759 | + | putative membrane protein | - |
| 45 | STY4564 | NP_458650.1 | 4445185-4445457 | 273 | + | hypothetical protein | - |
| 46 | STY4565 | NP_458651.1 | 4445457-4445696 | 240 | + | putative membrane protein | - |
| 47 | STY4566 | NP_458652.1 | 4445726-4446088 | 363 | + | putative membrane protein | - |
| 48 | STY4568 | NP_458653.1 | 4446469-4447122 | 654 | + | possible exported protein | - |
| 49 | STY4569 | NP_458654.1 | 4447122-4448021 | 900 | + | hypothetical protein | - |
| 50 | STY4570 | NP_458655.1 | 4448011-4449489 | 1479 | + | putative exported protein | - |
| 51 | STY4571 | NP_458656.1 | 4449482-4449925 | 444 | + | putative lipoprotein | - |
| 52 | STY4572 | NP_458657.1 | 4449922-4450341 | 420 | + | hypothetical protein | - |
| 53 | STY4573 | NP_458658.1 | 4450338-4452761 | 2424 | + | hypothetical protein | - |
| 54 | STY4574 | NP_458659.1 | 4452916-4453302 | 387 | + | hypothetical protein | - |
| 55 | STY4575 | NP_458660.1 | 4453457-4453849 | 393 | + | hypothetical protein | - |
| 56 | STY4576 | NP_458661.1 | 4453846-4454814 | 969 | + | hypothetical protein | - |
| 57 | STY4577 | NP_458662.1 | 4454829-4456259 | 1431 | + | hypothetical protein | - |
| 58 | STY4578 | NP_458663.1 | 4456256-4456588 | 333 | + | putative membrane protein | - |
| 59 | STY4579 | NP_458664.1 | 4456592-4458097 | 1506 | + | putative membrane protein | - |
| 60 | STY4580 | NP_458665.1 | 4458133-4458522 | 390 | - | putative membrane protein | - |
| 61 | STY4582 | NP_458666.1 | 4458746-4459105 | 360 | - | possible exported protein | - |
| 62 | STY4583 | NP_458667.1 | 4459393-4460640 | 1248 | + | conserved hypothetical protein | Virulence |
| 63 | STY4584 | NP_458668.1 | 4460652-4461266 | 615 | + | conserved hypothetical protein | Virulence |
| 64 | STY4585 | NP_458669.1 | 4461477-4462019 | 543 | - | hypothetical protein | - |
| 65 | STY4586 | NP_458670.1 | 4463285-4464205 | 921 | + | hypothetical protein | - |
| 66 | STY4587 | NP_458671.1 | 4464722-4465231 | 510 | + | hypothetical protein | - |
| 67 | STY4588 | NP_458672.1 | 4465327-4465707 | 381 | + | hypothetical protein | - |
| 68 | STY4589 | NP_458673.1 | 4466173-4466757 | 585 | + | hypothetical protein | - |
| 69 | STY4590 | NP_458674.1 | 4466754-4467050 | 297 | + | hypothetical protein | - |
| 70 | STY4591 | NP_458675.1 | 4467128-4467586 | 459 | + | hypothetical protein | - |
| 71 | STY4592 | NP_458676.1 | 4467675-4469624 | 1950 | + | hypothetical protein | - |
| 72 | STY4593 | NP_458677.1 | 4469696-4470604 | 909 | + | hypothetical protein | - |
| 73 | STY4594 | NP_458678.1 | 4470678-4471577 | 900 | + | hypothetical protein | - |
| 74 | STY4595 | NP_458679.1 | 4471619-4471978 | 360 | + | conserved hypothetical protein | - |
| 75 | STY4596 | NP_458680.1 | 4472078-4472347 | 270 | - | hypothetical protein | - |
| 76 | samB | NP_458681.1 | 4472479-4473753 | 1275 | - | UV protection protein | - |
| 77 | samA | - | 4473753-4473830 | 78 | - | - | - |
| 78 | STY4599 | NP_458682.1 | 4473973-4474350 | 378 | + | hypothetical protein | - |
| 79 | STY4600 | NP_458683.1 | 4474437-4474655 | 219 | - | putative positive regulator of late gene transcription | - |
| 80 | STY4601 | NP_458684.1 | 4474723-4475823 | 1101 | - | putative regulator of late gene expression | - |
| 81 | STY4602 | NP_458685.1 | 4475820-4476305 | 486 | - | putative phage tail protein | - |
| 82 | STY4603 | NP_458686.1 | 4476305-4479085 | 2781 | - | hypothetical protein | - |
| 83 | STY4604 | NP_458687.1 | 4479078-4479197 | 120 | - | hypothetical protein | - |
| 84 | STY4605 | NP_458688.1 | 4479212-4479514 | 303 | - | putative phage tail protein | - |
| 85 | STY4606 | NP_458689.1 | 4479569-4480084 | 516 | - | probable major tail tube protein | - |
| 86 | STY4607 | NP_458690.1 | 4480094-4481266 | 1173 | - | probable major tail sheath protein | - |
| 87 | 'pin | - | 4481369-4481590 | 222 | - | DNA-invertase (pseudogene) | - |
| 88 | sopE | NP_458691.1 | 4481801-4482523 | 723 | + | invasion-associated secreted protein. | Virulence |
| 89 | STY4610 | NP_458692.1 | 4482721-4483128 | 408 | - | putative phage tail fibre protein | - |
| 90 | STY4611 | NP_458693.1 | 4483135-4484754 | 1620 | - | probable phage tail fibre protein | - |
| 91 | STY4612 | NP_458694.1 | 4484751-4485356 | 606 | - | putative phage tail protein | - |
| 92 | STY4613 | NP_458695.1 | 4485349-4486257 | 909 | - | probable phage baseplate assembly protein | - |
| 93 | STY4614 | NP_458696.1 | 4486244-4486603 | 360 | - | phage baseplate assembly protein | - |
| 94 | STY4615 | NP_458697.1 | 4486600-4487178 | 579 | - | putative phage baseplate assembly protein | - |
| 95 | STY4616 | NP_458698.1 | 4487247-4487693 | 447 | - | putative phage tail completion protein | - |
| 96 | STY4617 | NP_458699.1 | 4487686-4488117 | 432 | - | putative phage tail protein | - |
| 97 | STY4618 | NP_458700.1 | 4488213-4488638 | 426 | - | putative regulatory protein | - |
| 98 | STY4619 | NP_458701.1 | 4488638-4489015 | 378 | - | putative membrane protein | - |
| 99 | nucD2 | NP_458702.1 | 4489020-4489490 | 471 | - | putative lysozyme | - |
| 100 | nucE2 | NP_458703.1 | 4489510-4489725 | 216 | - | possible secretion protein | - |
| 101 | STY4622 | NP_458704.1 | 4489729-4489932 | 204 | - | putative phage tail protein | - |
| 102 | STY4623 | NP_458705.1 | 4489932-4490396 | 465 | - | putative capsid completion protein | - |
| 103 | STY4624 | NP_458706.1 | 4490490-4491140 | 651 | - | putative phage terminase | - |
| 104 | STY4625 | NP_458707.1 | 4491144-4492208 | 1065 | - | putative major capsid protein | - |
| 105 | STY4626 | NP_458708.1 | 4492225-4493058 | 834 | - | putative capsid protein | - |
| 106 | STY4627 | NP_458709.1 | 4493201-4494967 | 1767 | + | probable terminase subunit | - |
| 107 | STY4628 | NP_458710.1 | 4494964-4496010 | 1047 | + | probable capsid portal protein | - |
| 108 | STY4629 | NP_458711.1 | 4496059-4496754 | 696 | - | hypothetical protein | - |
| 109 | STY4630 | NP_458712.1 | 4496774-4497838 | 1065 | - | hypothetical protein | - |
| 110 | STY4631 | NP_458713.1 | 4497835-4498899 | 1065 | - | hypothetical protein | - |
| 111 | STY4632 | NP_458714.1 | 4498909-4499127 | 219 | - | hypothetical protein | - |
| 112 | STY4633 | - | 4499226-4499656 | 431 | - | SOS operon tum protein (pseudogene) | - |
| 113 | STY4635 | NP_458715.1 | 4499824-4502238 | 2415 | - | conserved hypothetical protein | - |
| 114 | STY4636 | NP_458716.1 | 4502229-4503089 | 861 | - | DNA adenine methylase | - |
| 115 | STY4637 | NP_458717.1 | 4503086-4503670 | 585 | - | putative exonuclease | - |
| 116 | STY4638 | NP_458718.1 | 4503667-4503894 | 228 | - | hypothetical protein | - |
| 117 | STY4639 | NP_458719.1 | 4503894-4504127 | 234 | - | hypothetical protein | - |
| 118 | STY4640 | NP_458720.1 | 4504195-4504536 | 342 | - | conserved hypothetical protein | - |
| 119 | STY4641 | NP_458721.1 | 4504500-4504700 | 201 | - | hypothetical protein | - |
| 120 | cII | NP_458722.1 | 4504708-4505217 | 510 | - | phage regulatory protein | - |
| 121 | apl | NP_458723.1 | 4505250-4505492 | 243 | - | phage regulatory protein | - |
| 122 | cI | NP_458724.1 | 4505609-4506241 | 633 | + | phage repressor protein cI | - |
| 123 | STY4645 | NP_458725.1 | 4506245-4507270 | 1026 | + | phage integrase | - |
| 124 | STY4647 | NP_458726.1 | 4507998-4508111 | 114 | + | hypothetical protein | - |
| 125 | STY4648 | NP_458727.1 | 4508347-4508634 | 288 | + | hypothetical protein | - |
| 126 | STY4649 | NP_458728.1 | 4508645-4509535 | 891 | + | Putative methyltransferase | - |
| 127 | yjhP | NP_458729.1 | 4509535-4510281 | 747 | + | conserved hypothetical protein | - |
| 128 | vexE | NP_458730.1 | 4510583-4512553 | 1971 | - | Vi polysaccharide export protein | Virulence |
| 129 | vexD | NP_458731.1 | 4512573-4513877 | 1305 | - | Vi polysaccharide export inner-membrane protein | Virulence |
| 130 | vexC | NP_458732.1 | 4513900-4514595 | 696 | - | Vi polysaccharide export ATP-binding protein | Virulence |
| 131 | vexB | NP_458733.1 | 4514621-4515415 | 795 | - | Vi polysaccharide export inner-membrane protein (ABC-2 type transporter) | Virulence |
| 132 | vexA | NP_458734.1 | 4515425-4516492 | 1068 | - | Vi polysaccharide export protein | Virulence |
| 133 | tviE | NP_458735.1 | 4516537-4518273 | 1737 | - | Vi polysaccharide biosynthesis protein TviE, Glycosyl transferases group 1 | Virulence |
| 134 | NA | - | 4518274-4518296 | 23 | + | - | - |
| 135 | insB | NP_458736.1 | 4518289-4518792 | 504 | - | insertion element IS1 protein InsB | - |
| 136 | insA | NP_458737.1 | 4518711-4518986 | 276 | - | insertion element IS1 protein | - |
| 137 | NA | - | 4519019-4519041 | 23 | - | - | - |
| 138 | tviD | NP_458738.1 | 4519050-4521545 | 2496 | - | Vi polysaccharide biosynthesis protein | Virulence |
| 139 | tviC | NP_458739.1 | 4521569-4522615 | 1047 | - | Vi polysaccharide biosynthesis protein, epimerase | Virulence |
| 140 | tviB | NP_458740.1 | 4522618-4523895 | 1278 | - | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence |
| 141 | tviA | NP_458741.1 | 4524140-4524679 | 540 | - | Vi polysaccharide biosynthesis protein | Virulence |
| 142 | STY4663 | NP_458742.1 | 4525220-4525408 | 189 | + | hypothetical protein | - |
| 143 | STY4664 | NP_458743.1 | 4525533-4527044 | 1512 | + | putative DNA helicase | - |
| 144 | STY4665 | NP_458744.1 | 4527028-4528617 | 1590 | + | hypothetical protein | - |
| 145 | STY4666 | NP_458745.1 | 4528781-4529794 | 1014 | + | probable phage integrase | - |
| 146 | STY4667 | NP_458746.1 | 4530221-4530514 | 294 | + | hypothetical protein | - |
| 147 | STY4668 | NP_458747.1 | 4530511-4530999 | 489 | + | conserved hypothetical protein | - |
| 148 | STY4669 | NP_458748.1 | 4531179-4531631 | 453 | - | putative membrane protein | - |
| 149 | STY4670 | NP_458749.1 | 4532268-4534553 | 2286 | - | hypothetical protein | - |
| 150 | STY4671 | NP_458750.1 | 4534634-4536307 | 1674 | - | putative membrane protein | - |
| 151 | STY4672 | NP_458751.1 | 4536854-4537315 | 462 | + | hypothetical protein | - |
| 152 | cII | NP_458752.1 | 4537312-4537533 | 222 | + | transcriptional regulatory protein | - |
| 153 | STY4674 | NP_458753.1 | 4537567-4537710 | 144 | - | hypothetical protein | - |
| 154 | STY4675 | NP_458754.1 | 4537926-4538252 | 327 | - | hypothetical protein | - |
| 155 | STY4676 | NP_458755.1 | 4538390-4539172 | 783 | + | hypothetical protein | - |
| 156 | STY4677 | NP_458756.1 | 4539197-4539409 | 213 | - | putative membrane protein | - |
| 157 | int | NP_458757.1 | 4539799-4540077 | 279 | - | integrase (fragment) | - |
| 158 | STY4679 | NP_458758.1 | 4540153-4541343 | 1191 | - | putative membrane protein | - |
| 159 | int | NP_458759.1 | 4541654-4542913 | 1260 | - | bacteriophage integrase | - |
| 160 | tRNA-Phe | - | 4543073-4543148 | 76 | - | tRNA-Phe | - |