Genome Information

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Genome Information

• General information

Accession:

Strain :

Alicycliphilus denitrificans

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	1835667	1858931	23265	25	65.85 %	1	PAPI-1 (Pseudomonas aeruginosa PA14) PAGI-2(C) (Pseudomonas aeruginosa C) PAGI-3(SG) (Pseudomonas aeruginosa SG17M) PAGI-5 (Pseudomonas aeruginosa PSE9) PPHGI-1 (Pseudomonas syringae 1302A) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi Ty2)
2	1896346	1925798	29453	29	65.94 %	1	ICEPmu1 (Pasteurella multocida 36950) Not named (Proteus mirabilis HI4320) PAPI-1 (Pseudomonas aeruginosa PA14) ExoU island A (Pseudomonas aeruginosa 6077) PAGI-2(C) (Pseudomonas aeruginosa C) PAGI-3(SG) (Pseudomonas aeruginosa SG17M) PAGI-5 (Pseudomonas aeruginosa PSE9) PPHGI-1 (Pseudomonas syringae 1302A) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) YAPI (Yersinia pseudotuberculosis 32777) YAPI (Yersinia enterocolitica 8081) YAPI (Yersinia pseudotuberculosis IP 31758)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	1986223	2024237	38015	44	67.31 %	1	ICEPmu1 (Pasteurella multocida 36950) Not named (Proteus mirabilis HI4320) PAPI-1 (Pseudomonas aeruginosa PA14) ExoU island A (Pseudomonas aeruginosa 6077) PAGI-2(C) (Pseudomonas aeruginosa C) PAGI-3(SG) (Pseudomonas aeruginosa SG17M) PAGI-5 (Pseudomonas aeruginosa PSE9) PPHGI-1 (Pseudomonas syringae 1302A) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi Ty2) YAPI (Yersinia pseudotuberculosis 32777) YAPI (Yersinia enterocolitica 8081) YAPI (Yersinia pseudotuberculosis IP 31758)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of REI-resistance genes	REIs homologous to this region
1	2046800	2066568	19769	23	64.54 %	6	AbaR1 (Acinetobacter baumannii AYE) AbaR5 (Acinetobacter baumannii 3208) Tn2411 (Escherichia coli 42) SGI1 (Proteus mirabilis PmVER) SGI1 (Proteus mirabilis PmGUE) PAPI-1 (Pseudomonas aeruginosa PA14) ExoU island A (Pseudomonas aeruginosa 6077) PAGI-2 (Pseudomonas aeruginosa U6) PAGI-2(C) (Pseudomonas aeruginosa C) PAGI-2(C) (Pseudomonas aeruginosa U09) PAGI-3(SG) (Pseudomonas aeruginosa SG17M) PAGI-5 (Pseudomonas aeruginosa PSE9) PPHGI-1 (Pseudomonas syringae 1302A) SGI1 (Salmonella enterica SRC73)

• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

*