Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Dickeya zeae

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	491443	550541	59099	62	54.06 %	1	ICEPmu1 (Pasteurella multocida 36950) Not named (Proteus mirabilis HI4320) PAPI-1 (Pseudomonas aeruginosa PA14) ExoU island A (Pseudomonas aeruginosa 6077) PAGI-2(C) (Pseudomonas aeruginosa C) PAGI-3(SG) (Pseudomonas aeruginosa SG17M) PAGI-5 (Pseudomonas aeruginosa PSE9) PPHGI-1 (Pseudomonas syringae 1302A) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi Ty2) YAPI (Yersinia pseudotuberculosis 32777) YAPI (Yersinia enterocolitica 8081) YAPI (Yersinia pseudotuberculosis IP 31758)
2	1070772	1083477	12706	11	47.28 %	5	LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) AGI-3 (Escherichia coli BEN2908) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI-I AL862 (Escherichia coli AL862) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000)
3	1693607	1708740	15134	17	54.12 %	2	HPI (Escherichia coli ECOR31)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	2151273	2176905	25633	27	57.42 %	17	Hrp PAI (Erwinia amylovora 321) S-PAI (Pseudomonas cichorii Jan-83) Hrp PAI (Pseudomonas syringae DC3000) Hrp PAI (Pseudomonas syringae 61) Hrp PAI (Pseudomonas syringae pv. tomato DC3000) T-PAI (Pseudomonas viridiflava LP23.1a) T-PAI (Pseudomonas viridiflava PNA3.3a) S-PAI (Pseudomonas viridiflava RMX23.1a) S-PAI (Pseudomonas viridiflava ME3.1b) S-PAI (Pseudomonas viridiflava RMX3.1b)
2	3172120	3190930	18811	14	60.73 %	8	AGI-1 (Escherichia coli BEN2908) PAI II APEC-O1 (Escherichia coli APEC O1)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

*

• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

*