Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Staphylococcus aureus

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

No	Name	Start	End	Size(bp)	Insertion Site	Function
1	SaPIbov	388732	404695	15964	GMP synthase gene	staphylococcal enterotoxin
2	SaPIbov2	2020407	2038340	17934	-	multidrug resistance protein, mobile element-associated protein)

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	1799182	1883922	84741	100	31.58 %	24	vSa¥â (Staphylococcus aureus subsp. aureus N315) vSa¥â (Staphylococcus aureus subsp. aureus Mu50) vSa¥â (Staphylococcus aureus subsp. aureus COL) vSa¥â (Staphylococcus aureus subsp. aureus MRSA252) vSa¥â (Staphylococcus aureus subsp. aureus MSSA476) vSa¥â (Staphylococcus aureus subsp. aureus MW2) vSa¥â (Staphylococcus aureus FPR3757) vSa¥â (Staphylococcus aureus Newman) vSa¥â (Staphylococcus aureus MSHR1132) vSa¥â (Staphylococcus aureus CN1) ¥ÕSa1 (Staphylococcus aureus subsp. aureus Mu50) ¥ÕSa1 (Staphylococcus aureus ED133) ¥ÕSa2 (Staphylococcus aureus subsp. aureus MW2) ¥ÕSa2 (Staphylococcus aureus FPR3757) ¥ÕSa2 (Staphylococcus aureus ED133) ¥ÕSa3 (Staphylococcus aureus subsp. aureus N315) ¥ÕSa3 (Staphylococcus aureus subsp. aureus Mu50) ¥ÕSa3 (Staphylococcus aureus FPR3757) ¥ÕSa3 (Staphylococcus aureus FPR3757) ¥ÕSa3 (Staphylococcus aureus ED133) ¥ÕSa3 (Staphylococcus aureus CN1)
2	2020407	2040037	19631	31	30.78 %	3	SaPI1 (Staphylococcus aureus RN4282) SaPI2 (Staphylococcus aureus RN3984) SaPI2 (Staphylococcus aureus ED133) SaPI3 (Staphylococcus aureus COL) SaPI4 (Staphylococcus aureus subsp. aureus MRSA252) SaPI68111 (Staphylococcus aureus 68111) SaPIbov (Staphylococcus aureus RF122) SaPIbov (Staphylococcus aureus RF122) SaPIbov2 (Staphylococcus aureus V329) SaPIbov2 (Staphylococcus aureus RF122) vSa1 (Staphylococcus aureus subsp. aureus COL) vSa3 (Staphylococcus aureus subsp. aureus Mu50) vSa4 (Staphylococcus aureus subsp. aureus N315) vSa4 (Staphylococcus aureus subsp. aureus Mu50) SaPIAv (Staphylococcus aureus ED98)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	33918	54629	20712	19	31.32 %	2	Type-I SCCmec (Staphylococcus aureus NCTC10442) Type-I SCCmec (Staphylococcus aureus subsp. aureus COL) Type-II SCCmec (Staphylococcus aureus N315) Type-II SCCmec (Staphylococcus aureus subsp. aureus Mu50) Type-IIIinv SCCmec (Staphylococcus aureus 85/3907) SCC 12263 (Staphylococcus hominis GIFU12263) SCCcap1 (Staphylococcus aureus M)
2	311957	320612	8656	10	32.57 %	1	¥ÕSa1 (Staphylococcus aureus ED133) ¥ÕSa2 (Staphylococcus aureus subsp. aureus MW2) ¥ÕSa2 (Staphylococcus aureus FPR3757)
3	387205	450719	63515	72	32.11 %	22	SaPI1 (Staphylococcus aureus RN4282) SaPI1 (Staphylococcus aureus ED133) SaPI2 (Staphylococcus aureus RN3984) SaPI3 (Staphylococcus aureus COL) SaPI4 (Staphylococcus aureus subsp. aureus MRSA252) SaPI68111 (Staphylococcus aureus 68111) SaPIbov (Staphylococcus aureus RF122) SaPIbov (Staphylococcus aureus RF122) SaPIbov2 (Staphylococcus aureus V329) SaPIbov2 (Staphylococcus aureus RF122) SCCcap1 (Staphylococcus aureus M) vSa¥á (Staphylococcus aureus subsp. aureus N315) vSa¥á (Staphylococcus aureus subsp. aureus Mu50) vSa¥á (Staphylococcus aureus subsp. aureus COL) vSa¥á (Staphylococcus aureus subsp. aureus MRSA252) vSa¥á (Staphylococcus aureus subsp. aureus MSSA476) vSa¥á (Staphylococcus aureus subsp. aureus MW2) vSa¥á (Staphylococcus aureus FPR3757) vSa¥á (Staphylococcus aureus Newman) vSa¥á (Staphylococcus aureus MSHR1132) vSa¥á (Staphylococcus aureus CN1) vSa1 (Staphylococcus aureus subsp. aureus COL) vSa3 (Staphylococcus aureus subsp. aureus Mu50) vSa4 (Staphylococcus aureus subsp. aureus N315) vSa4 (Staphylococcus aureus subsp. aureus Mu50) SaPIAv (Staphylococcus aureus ED98) SAPI-S0385 (Staphylococcus aureus ST398)
4	1100940	1120774	19835	24	29.68 %	6	vSa¥ã (Staphylococcus aureus subsp. aureus N315) vSa¥ã (Staphylococcus aureus subsp. aureus Mu50) vSa¥ã (Staphylococcus aureus subsp. aureus COL) vSa¥ã (Staphylococcus aureus subsp. aureus MW2) vSa¥ã (Staphylococcus aureus FPR3757) vSa¥ã (Staphylococcus aureus CN1)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

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• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

*