Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Shigella boydii

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	227613	236822	9210	12	48.99 %	1	TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) SHI-2 (Shigella flexneri 2a str. 2457T)
2	243550	255408	11859	10	48.56 %	2	PAI I 536 (Escherichia coli 536) LEE (Escherichia coli 11128) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933)
3	1250157	1266041	15885	23	50.82 %	1	LEE (Escherichia coli 12009) LEE (Escherichia coli 11128) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) OI-122 (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI I CFT073 (Escherichia coli CFT073) PAI I CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 2457T) SHI-O (Shigella flexneri Y53) Not named (Shigella flexneri )
4	3243534	3252296	8763	9	51.2 %	1	TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) OI-122 (Escherichia coli O157:H7 EDL933) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T)
5	4193056	4228911	35856	33	48.08 %	3	LEE (Escherichia coli 11128) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI I CFT073 (Escherichia coli CFT073) SPI-10 (Salmonella enterica subsp. enterica serovar Typhi CT18) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri M90T)
6	4382982	4423383	40402	39	48.53 %	16	AGI-3 (Escherichia coli BEN2908) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) Not named (Escherichia coli UMN026) KpGI-5 (Klebsiella pneumoniae KR116) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) SHI-3 (Shigella boydii 0-1392)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	1006188	1014805	8618	13	51.72 %	1	LEE (Escherichia coli 11128) AGI-3 (Escherichia coli BEN2908)
2	3011121	3021675	10555	12	55.75 %	9	PAI I APEC-O1 (Escherichia coli APEC O1) PAI V 536 (Escherichia coli 536)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

*

• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of REI-resistance genes	REIs homologous to this region
1	4457023	4468239	11217	11	54.73 %	1	tcd island (Photorhabdus luminescens W14)