Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Francisella tularensis

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

No	Name	Start	End	Size(bp)	Insertion Site	Function
1	FPI	1374666	1408244	33579	5S rRNA	Intramacrophage growth and virulence in mice, IglABCD (need for secretion), PdpABCD (secreted protein); a duplicated region of 33.9 kb (nucleotides 1,374,371?1,408,281 and 1,767,715?1,801,625), which lacked homologs in 16 other gamma-proteobacterial geno
2	FPI	1768001	1801579	33579	5S rRNA	Intramacrophage growth and virulence in mice, IglABCD (need for secretion), PdpABCD (secreted protein); a duplicated region of 33.9 kb (nucleotides 1,374,371?1,408,281 and 1,767,715?1,801,625), which lacked homologs in 16 other gamma-proteobacterial geno

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

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• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	1374666	1408180	33515	26	31.11 %	8	FPI (Francisella novicida U112) FPI (Francisella tularensis subsp. tularensis Schu 4) FPI (Francisella tularensis subsp. tularensis Schu 4) FPI (Francisella tularensis WY96-3418) FPI (Francisella tularensis WY96-3418) FPI (Francisella tularensis FSC147) FPI (Francisella tularensis FSC147)
2	1766112	1801515	35404	31	31.07 %	8	FPI (Francisella novicida U112) FPI (Francisella tularensis subsp. tularensis Schu 4) FPI (Francisella tularensis subsp. tularensis Schu 4) FPI (Francisella tularensis WY96-3418) FPI (Francisella tularensis WY96-3418) FPI (Francisella tularensis FSC147) FPI (Francisella tularensis FSC147)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

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• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

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