Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Pseudomonas syringae

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

No	Name	Start	End	Size(bp)	Insertion Site	Function
1	Hrp PAI	1502395	1551861	49467	tRNA-leu	Type III secretion system, Hop, Avr, hypersensitive response, mosaic structure (exchangeable effector locus, hrp/hrc gene cluster,conserved effector locus)

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	1502395	1565062	62668	78	57.69 %	36	Hrp PAI (Erwinia amylovora 321) TTSS locus (Photorhabdus luminescens W14) Not named (Pseudomonas sp. KD) S-PAI (Pseudomonas cichorii Jan-83) Hrp PAI (Pseudomonas syringae DC3000) Hrp PAI (Pseudomonas syringae DH015) Hrp PAI (Pseudomonas syringae 61) Hrp PAI (Pseudomonas syringae Race 4) Hrp PAI (Pseudomonas syringae Pss61) Hrp PAI (Pseudomonas syringae pv. tomato DC3000) T-PAI (Pseudomonas viridiflava RMX23.1a) T-PAI (Pseudomonas viridiflava ME3.1b) T-PAI (Pseudomonas viridiflava RMX3.1b) T-PAI (Pseudomonas viridiflava LP23.1a) T-PAI (Pseudomonas viridiflava PNA3.3a) S-PAI (Pseudomonas viridiflava RMX23.1a) S-PAI (Pseudomonas viridiflava ME3.1b) S-PAI (Pseudomonas viridiflava RMX3.1b)
2	5342748	5353451	10704	12	53.47 %	1	Not named (Pseudomonas syringae DC3000)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	2870283	2894218	23936	8	63.92 %	7	PAI IV APEC-O1 (Escherichia coli APEC O1) Not named (Proteus mirabilis HI4320) HPI (Yersinia enterocolitica WA 314) HPI (Yersinia pestis 6/69) HPI (Yersinia pestis CO92) HPI (Yersinia pestis KIM) HPI (Yersinia pestis biovar Medievalis str. 91001) HPI (Yersinia pseudotuberculosis IP32953) HPI (Yersinia enterocolitica 8081)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

*

• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of REI-resistance genes	REIs homologous to this region
1	1013292	1022584	9293	11	58.38 %	6	TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) Tn6060 (Pseudomonas aeruginosa 37308)