Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Vibrio cholerae

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

No	Name	Start	End	Size(bp)	Insertion Site	Function
1	VSP-1	175343	189380	14038	VC0174/VC0186	Deoxycytidylate deaminase-related protein, phospholipase A
2	VSP-2	520634	550262	29629	tRNA-Met	Methyl accepting chemotaxis protein
3	VPI-1	873242	915211	41970	ssrA (potential regulatory 10Sa RNA molecule)	TcpA-adhesin, Mop, ToxT regulator
4	CTX	1550108	1574355	24248	-	-
5	VPI-2	1895692	1952861	57170	tRNA-ser	Neuraminidase, utilization of amino sugars

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	520634	550262	29629	28	40.71 %	3	VPI-2 (Vibrio cholerae Amazonia 3509) VSP-2 (Vibrio cholerae O1 biovar eltor str. N16961)
2	863289	916137	52849	41	37.28 %	24	VPI (Vibrio cholerae 395) VPI (Vibrio cholerae N16961) VPI (Vibrio cholerae M2140) VPI (Vibrio cholerae M1618) VPI (Vibrio cholerae M1567) VPI (Vibrio cholerae M1118) VPI (Vibrio cholerae M794) VPI (Vibrio cholerae M1619) VPI (Vibrio cholerae M1593) VPI (Vibrio cholerae M1121) VPI (Vibrio cholerae "ssp. classical 01, Z17561") VPI (Vibrio cholerae M1098) VPI (Vibrio cholerae Ogawa 395) VPI-1 (Vibrio cholerae O1 biovar eltor str. N16961) VPI-1 (Vibrio cholerae O395)
3	1550108	1579366	29259	22	46.77 %	12	CTX (Vibrio cholerae E7946) CTX (Vibrio cholerae 86015) CTX (Vibrio phage CTX) CTX (Vibrio cholerae O1 biovar eltor str. N16961) CTX (Vibrio cholerae O395) CTX (Vibrio cholerae 2010EL-1786)
4	1892430	1954129	61700	54	42.83 %	44	VPI-2 (Vibrio cholerae Amazonia 3509) VPI-2 (Vibrio cholerae O1 biovar eltor str. N16961) VPI-2 (Vibrio cholerae O395)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

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• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

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• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

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