Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Helicobacter pylori

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

No	Name	Start	End	Size(bp)	Insertion Site	Function
1	cag PAI	510500	548694	38195	murI (glutamate racemase)	Translocation of CagA, Type IV secretion system, stimulation of IL-8 synthesis

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

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• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	501230	548694	47465	36	36.33 %	28	cag PAI (Helicobacter pylori CCUG 17874=NCTC 11638) cag PAI (Helicobacter pylori OK107) cag PAI (Helicobacter pylori OK109) cag PAI (Helicobacter pylori OK129) cag PAI (Helicobacter pylori F28) cag PAI (Helicobacter pylori OK112) cag PAI (Helicobacter pylori J166 isolate 31063-2.8/rOut1) cag PAI (Helicobacter pylori F16) cag PAI (Helicobacter pylori F17) cag PAI (Helicobacter pylori Ca52) cag PAI (Helicobacter pylori Ca73) cag PAI (Helicobacter pylori Du52:2) cag PAI (Helicobacter pylori Du23:2) cag PAI (Helicobacter pylori F32) cag PAI (Helicobacter pylori F79) cag PAI (Helicobacter pylori F80) cag PAI (Helicobacter pylori OK101) cag PAI (Helicobacter pylori 26695) cag PAI (Helicobacter pylori J99) cag PAI (Helicobacter pylori B8) cag PAI (Helicobacter pylori F30) cag PAI (Helicobacter pylori F32) cag PAI (Helicobacter pylori F57) cag PAI (Helicobacter pylori F16)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

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• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

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